retrofit

Audit an existing repo's drift from a profile and remediate what's missing or misconfigured. This is the "fix it" counterpart to doctor's "tell me what's wrong."

1. Resolve the profile

Same logic as doctor — the audit is only meaningful against an intended baseline:

1. Check if the repo's CLAUDE.md (inside <!-- nyann:start --> markers)

declares an active profile name.

1. If the user passed --profile <name>, use that.
2. If neither, ask the user which profile to audit against. List available

profiles (starters + any user/team profiles). Don't silently default — the wrong baseline produces misleading drift.

Load via bin/load-profile.sh <name>. If exit 2 (not found), show the list the loader reports and ask again.

2. Run detection

Run bin/detect-stack.sh --path <target> to get the StackDescriptor. This ensures the remediation step has stack context for gitignore templates, hook phases, and CLAUDE.md rendering.

3. Run the drift audit

bin/retrofit.sh --target <cwd> --profile <resolved-name>

Do not pass `--report-only` — that's doctor's flag. Retrofit's default mode renders the report AND offers remediation guidance.

Pass --json only if the user explicitly asks for machine-readable output.

3a. Narrow scope (v1.7.0+)

If the user said something like "only fix the docs drift", "leave my hooks alone", "just the gitignore", or otherwise wants to remediate one part of the audit without touching others, pass --scope <csv> to retrofit:

The accepted categories are docs, hooks, branching, gitignore, editorconfig, github, history, all. Unknown values exit non-zero; surface the error to the user verbatim.

When the report covers fewer than the full 7 categories, the rendered text adds a Scope: <csv> line under the heading. The remediation plan in step 5 uses the same --scope so that bootstrap only writes the matching files.

3b. Multi-category prompt (when scope is unstated)

If the user did NOT specify a scope AND the resulting report shows drift in more than one category, prompt before remediation:

{
  "questions": [{
    "question": "Drift detected across multiple categories. Which to fix?",
    "header": "Scope",
    "multiSelect": true,
    "options": [
      {"label": "Docs",        "description": "CLAUDE.md size, doc scaffolds, links, orphans, staleness"},
      {"label": "Hooks",       "description": "Husky, commitlint, pre-commit.com, core hooks"},
      {"label": "Gitignore",   "description": "Missing stack-typical entries"},
      {"label": "Branching",   "description": "Profile-declared base/long-lived branches"},
      {"label": "GitHub",      "description": "CI workflow, PR template, branch + tag protection"},
      {"label": "Editorconfig","description": ".editorconfig presence"},
      {"label": "All",         "description": "Apply every remediation"}
    ]
  }]
}

Map the labels back to the --scope value: e.g. {Docs, Hooks} → docs,hooks. If the user picks "All", omit the flag.

4. Interpret the exit code

5. Remediate

When drift exists (exit 4 or 5) and the user confirms they want to fix it:

1. Build an ActionPlan from the drift report. Map missing items to

writes[] entries:

• Missing .gitignore → gitignore combiner handles it
• Missing .husky/*, commitlint.config.js → install-hooks.sh --jsts
• Missing .pre-commit-config.yaml → install-hooks.sh --python
• Missing docs/*, memory/* → scaffold-docs.sh
• Missing/oversized CLAUDE.md → gen-claudemd.sh
• Missing .editorconfig → include in plan if profile declares it

Misplaced docs (v1.9.0+): If the DriftReport's misplaced[] array is non-empty, docs exist at non-canonical paths. Before scaffolding new docs, offer to reorganize the existing ones:

   {
     "questions": [{
       "question": "Found docs at non-standard paths. Reorganize to nyann conventions?",
       "header": "Doc layout",
       "options": [
         {"label": "Yes, reorganize", "description": "Move docs to canonical paths (uses git mv). Content is preserved."},
         {"label": "No, scaffold fresh", "description": "Leave existing files and create new ones at canonical paths."}
       ],
       "multiSelect": false
     }]
   }

If Yes: write the misplaced[] array to a temp file and run bin/reorganize-docs.sh --target <cwd> --moves <temp.json> --apply before the scaffold step. (Without --apply, the script previews only — pass --apply after the user confirms.) After moves complete, the scaffold step detects the files at canonical paths and skips creation — preserving user content.

If No: proceed normally — scaffold-docs creates fresh templates at canonical paths (existing non-canonical files remain untouched).

1. Route docs via bin/route-docs.sh --profile <path> to get the

DocumentationPlan (needed by bootstrap for scaffold-docs and gen-claudemd).

Archetype-aware retrofit (v1.6.0+): if the profile sets documentation.use_archetype_scaffolds: true, the resolved DocumentationPlan will include the per-archetype doc set (api-reference / runbook / deployment / glossary as applicable). compute-drift will surface any missing files from that set as missing entries, and remediation will scaffold them.

When the profile leaves use_archetype_scaffolds unset/false, retrofit does NOT auto-flip it. Per the v1.6.0 design, opt-in stays opt-in — surface the absent flag as informational only: "This profile could enable archetype-aware scaffolds. Run /nyann:migrate-profile or set use_archetype_scaffolds: true in your profile to opt in."

1. Render merge previews via `bin/render-plan.sh --plan <plan.json>

--target <cwd> --profile <profile.json> --doc-plan <doc-plan.json> --templates-csv <jsts|python|...> --output <plan.rendered.json> so preview.sh can diff .gitignore and CLAUDE.md` merges against the current files. Skip render-plan only when neither path appears as a merge action in the plan.

1. Preview the rendered plan via `bin/preview.sh --plan <plan.rendered.json>

--target <cwd>. Pass --target so the merge-diff renderer resolves .path` entries against the actual repo. Show the user what will be created/merged. Respect skip requests.

1. Execute via bin/bootstrap.sh --source retrofit. The --source

flag labels the boot record so /nyann:undo-bootstrap can tell remediation runs apart from initial setups. Capture the plan SHA-256 first via bin/preview.sh --emit-sha256, then pass it through as --plan-sha256 so bootstrap can verify the plan bytes haven't changed between the user's confirmation and execution. The SHA binding is required; bootstrap refuses to run without it.

   sha=$(bin/preview.sh --plan <confirmed-plan.json> --emit-sha256)
   bin/bootstrap.sh \
     --target <cwd> \
     --plan <confirmed-plan.json> \
     --plan-sha256 "$sha" \
     --profile <path> \
     --doc-plan <doc-plan.json> \
     --stack <stack.json> \
     --source retrofit

Bootstrap is idempotent — existing user content is preserved, hooks are merged (not overwritten), gitignore entries are deduplicated.

1. Re-run doctor after remediation to confirm the drift is resolved.

Show the before/after delta.

6. What retrofit does NOT do

• History rewrites. Non-compliant commits are flagged, never fixed.

Tell the user: "Past commits are informational only. Future commits will be validated by the hooks we just installed."

• Application scaffolding. Retrofit adds git workflow infrastructure,

not app code.

• Dependency installation. It writes hook configs but won't run

npm install or pip install. Tell the user to run their package manager after retrofit.

7. Output summary

End with a compact report:

• Profile audited against.
• Drift found: N missing, N misconfigured, N non-compliant commits.
• Files created/merged (count).
• Hook phases run.
• Whether CLAUDE.md is now within budget.
• Remaining items that need manual attention (if any).

When to hand off

• "Just tell me what's wrong, don't fix it" → hand off to doctor.
• "Set up from scratch" → hand off to bootstrap-project.
• "I want a different profile" → ask which one, then re-run retrofit

with the new profile.