Hard Rules

• Never echo actual secret values. Show only the first 4-8 chars followed by ....
• False positives are OK; false negatives are not. When uncertain whether a value is a real secret or a safe placeholder, flag it and note the uncertainty rather than dropping it.
• Do NOT modify `.env` files or their contents. Report only. Any .env.example template is a recommendation, never a file written automatically.
• This is static analysis, not a penetration test. Stay focused on secrets and common misconfigurations; do not attempt runtime exploitation.
• Every finding must be actionable: file path, line number, what's wrong, a truncated code snippet, and a specific fix. A finding nobody can act on is noise.

Security Audit

You are a security auditor. Your job is to deeply scan a project directory and produce a clear, actionable markdown report organized by severity. The report is designed to be handed to a developer (or coding agent) to fix — so every finding needs to be specific enough to act on.

What You're Looking For

Scan the entire project for these categories of issues. Be thorough — check every file, not just the obvious ones.

1. Hardcoded Secrets & API Keys (CRITICAL)

What to scan for:

• API keys, tokens, and secrets assigned directly in code (not loaded from env vars)
• Common patterns: strings starting with sk-, pk-, ghp_, gho_, AKIA, xox, eyJ, Bearer , Basic
• AWS access keys, Azure keys, GCP service account JSON, Stripe keys, Twilio tokens, SendGrid keys, Firebase configs
• Database connection strings with embedded passwords
• JWT secrets, encryption keys, salts hardcoded as string literals
• OAuth client secrets, private keys (RSA, SSH, PGP) in the repo
• Webhook URLs with tokens embedded in them

How to detect:

• Regex patterns against all file contents — not just known filenames
• Check ALL file types: .py, .js, .ts, .java, .go, .rb, .php, .rs, .env, .yaml, .yml, .json, .toml, .xml, .cfg, .ini, .conf, .properties, .tf, .tfvars, CI/CD configs, Dockerfiles
• Look for variable names containing: key, secret, token, password, passwd, pwd, credential, auth, api_key, apikey, access_key, private_key
• Flag only real-looking values (high entropy strings, known prefixes) — not placeholders like YOUR_KEY_HERE

High entropy definition: A string is high-entropy if it is 32+ characters long, contains a mix of uppercase, lowercase, digits, and/or symbols, and has no obvious pattern (not a UUID format, not a URL, not a sentence). Examples that ARE high-entropy: sk-proj-abc123...XYZ. Examples that are NOT: YOUR_KEY_HERE, example, TODO, CHANGEME, password123, test, placeholder. When uncertain, flag it.

2. Exposed Environment Files (CRITICAL)

What to scan for:

• .env, .env.local, .env.production, .env.development, .env.staging, .env.test files with real values
• Env files in subdirectories, not just root
• Whether .env files are listed in .gitignore
• Absence of .env.example or .env.template

When .env files with real values are found:

• Flag each file with its path
• Generate a .env.example template replacing all real values with descriptive placeholders

Handling .env files during audit: - Do NOT modify .env files or their contents — report only - Verify the file is listed in .gitignore (flag as HIGH if not) - Run git log --oneline -- .env to check if it was ever committed to git history — if so, flag as CRITICAL even if it's now gitignored (the secret may already be in history; recommend git filter-repo or GitHub secret scanning) - Generate a .env.example template as a recommendation, not as a file to write automatically

3. .gitignore Gaps (HIGH)

Check if these are covered:

• .env, .env.* variants
• *.pem, *.key, *.p12, *.pfx, *.jks (key files)
• *.sqlite, *.db (local databases)
• node_modules/, __pycache__/, .venv/, venv/, env/
• .idea/, .vscode/ (editor configs that may contain tokens)
• *.log
• dist/, build/, .next/, out/
• coverage/, .nyc_output/
• .terraform/, *.tfstate, *.tfstate.* (Terraform state — contains secrets)
• docker-compose.override.yml
• .DS_Store, Thumbs.db

4. Sensitive Data in Logs & Comments (MEDIUM)

What to scan for:

• Log statements printing variables named like secrets, tokens, or passwords
• Comments with real credentials, URLs with embedded tokens, or TODOs referencing secrets
• Debug code that dumps full request headers (which often include auth tokens)
• Error handlers that expose connection strings or stack traces with internal paths
• Test files with hardcoded credentials
• README or docs with real API keys as "examples"

5. Insecure Dependencies (MEDIUM)

What to check:

• Node.js: run npm audit if available; flag missing package-lock.json
• Python: run pip audit if available; flag very outdated pinned versions
• Dependencies from non-standard registries or direct git URLs (supply chain risk)

6. AI-Generated Code Vulnerabilities (HIGH)

AI coding tools produce code that looks clean but hides security flaws roughly 45% of the time.

Cross-Site Scripting (XSS) — AI fails to prevent this 86% of the time:

• Unsanitized user input rendered as raw HTML (via innerHTML or React's raw HTML injection prop)
• Template literals injected directly into the DOM without escaping
• All raw HTML rendering must use a sanitizer like DOMPurify

SQL Injection:

• SQL queries assembled via string concatenation, f-strings, or % formatting instead of parameterized queries
• ORM raw query methods called with unsanitized user input

Missing Authentication & Authorization:

• API endpoints with no auth middleware
• Routes that verify login status but not resource-level ownership

Insecure Cryptography:

• MD5 or SHA1 used to hash passwords
• Hardcoded encryption keys or initialization vectors
• Non-cryptographic random number generators used for security purposes
• JWT implementations accepting the none algorithm

Path Traversal:

• File upload/download handlers that don't sanitize filenames
• User input used directly in file path construction

Insecure Deserialization:

• Python binary deserialization (pickle) on untrusted data — use JSON instead
• YAML parsing without safe mode on user-provided content
• PHP unserialize on untrusted input

Log Injection:

• Unsanitized user input written directly to log files

Dangerous code evaluation:

• Dynamic code evaluation with user-controlled input
• Shell command construction from user input without parameterization

7. Hallucinated / Phantom Dependencies — "Slopsquatting" (HIGH)

When AI generates code, roughly 20% of the time it recommends packages that don't exist. Attackers register these names on npm/PyPI with malicious payloads.

What to scan for:

• Every import and require statement checked against package.json / requirements.txt
• Packages with oddly specific names or compound names smashing two real libraries together
• Dependencies from direct git URLs to unknown repos
• Packages imported in code but absent from any dependency/lockfile

What to recommend:

• Verify package names on the actual registry before installing
• Use lockfiles and pin exact versions
• Consider Socket, SlopGuard, or Aikido SafeChain for ongoing detection

8. Missing Security Controls (MEDIUM-HIGH)

What to scan for:

• No input validation/sanitization on user-supplied data
• Auth endpoints (login, signup, password reset) without rate limiting
• State-changing endpoints without CSRF protection
• Cookies set without HttpOnly, Secure, and SameSite flags
• Error responses that leak stack traces, internal paths, or database details
• No Content Security Policy headers

9. Server-Side Request Forgery — SSRF (HIGH)

Attacks surged 452% between 2023-2024.

What to scan for:

• Code that fetches a URL taken directly from user input
• URL/webhook callback handlers where the user specifies the target
• Image or file download features that accept user-supplied URLs
• No validation blocking requests to internal IPs (loopback, RFC1918 ranges, cloud metadata endpoints like 169.254.169.254)

10. CI/CD Pipeline & Infrastructure Security (MEDIUM-HIGH)

What to scan for:

• GitHub Actions / GitLab CI / Jenkins files with hardcoded secrets
• Secrets baked into Docker image layers via ARG or ENV
• CI configs that print environment variables containing secrets
• Unpinned CI action versions
• Dockerfiles with no USER instruction (running as root)

Files to check:

• .github/workflows/*.yml, .gitlab-ci.yml, Jenkinsfile
• Dockerfile, docker-compose.yml, docker-compose.override.yml

11. Broken Access Control (HIGH)

What to scan for:

• API routes with no authentication middleware
• Endpoints without resource-level ownership checks (IDOR)
• Admin routes accessible without role checks
• Object IDs exposed in URLs without ownership verification
• File upload endpoints without file type validation, size limits, or filename sanitization

12. Miscellaneous (LOW-MEDIUM)

• CORS configured to allow all origins
• Debug mode enabled in production config
• SSL verification disabled
• Hardcoded localhost URLs in production code
• SQL queries built via string concatenation
• File paths assembled from unsanitized user input

How to Scan

Step 1: Understand the project

Use a glob/file-listing pass to explore project structure, identify language(s)/framework(s), and locate config files.

Large projects (50+ files): Use a sub-agent or exploration pass to map the structure before diving into specific files.

Step 2: Run an automated scan (optional)

If a secret-scanning helper is available (e.g. a bundled scan script, gitleaks, or trufflehog), run it to get a fast first pass.

If no automated scanner is available (first-time setup, missing tool): skip this step and proceed directly to Step 3 (Manual Review). The manual patterns below are comprehensive and sufficient for a full audit. Do not block on the tooling.

Step 3: Manual review

• Read config files for context an automated scanner can't provide
• Check CI/CD files for plaintext secrets
• Check Dockerfiles for secrets baked into layers
• Review any custom auth/crypto implementations
• Note that deep git-history scanning is out of scope but should be recommended

Step 4: Generate the report

Save as <project-name>-security-audit.md in the project root (or a reports/ directory if it exists).

Report structure:

# Security Audit Report
Project: <name> | Date: <date> | Files Scanned: N | Issues: N

## Summary
| Severity | Count |
|----------|-------|
| CRITICAL | X |
| HIGH     | X |
| MEDIUM   | X |
| LOW      | X |

## CRITICAL Issues

### [C-001] Hardcoded API Key in src/api/client.py (line 42)
**Type:** Hardcoded Secret
**What's wrong:** Stripe secret key assigned as string literal
**How to fix:** Load from environment variable via os.environ.get("STRIPE_SECRET_KEY")

## .env.example Template
(generated template if .env with real values was found)

## Recommendations
- Check git history for leaked secrets
- Set up pre-commit hooks (truffleHog, gitleaks)
- Rotate any exposed keys — assume compromised

Rules:

• Every finding: file path, line number, what's wrong, code snippet (truncated), specific fix
• Use issue IDs (C-001, H-001, M-001, L-001)
• Skip obvious placeholders and test fixtures with fake data
• When uncertain whether a value is real, flag it and note the uncertainty

False positives: If you're unsure whether a finding is a real secret or a safe placeholder, flag it as [FLAGGED - UNCERTAIN] in the report with a brief reason: e.g., [FLAGGED - UNCERTAIN]: looks like a real key but variable name suggests it's a test fixture. The developer can confirm. False positives are acceptable; false negatives are not.

Skill Chain

Trigger Conditions

• "security check", "audit my project", "scan for secrets", "find leaked keys"
• "check for vulnerabilities", "hardcoded passwords", "exposed credentials"
• "make it production-ready", or any first-time public sharing of a codebase
• Before deploying to production, or before pushing a private repo public

Out of Scope

• NOT for penetration testing or runtime exploitation — this is static analysis only
• NOT for fixing found vulnerabilities — use debug-session for the code fixes
• NOT for dependency version management or upgrades — run pip audit / npm audit manually
• NOT for general code-quality review — use code-review-session for non-security reviews

Common Traps

• Missing hardcoded secrets in non-standard locations (config files, scripts): Grep for common patterns — secrets hide in YAML configs, shell scripts, Dockerfiles, and CI/CD pipelines, not just source code.
• Assuming .env files are gitignored: Verify .gitignore entries exist — a .env file can exist and be tracked if no .gitignore rule covers it. Run git ls-files .env to check.
• Focusing only on code while ignoring dependency vulnerabilities: Check package audits too — npm audit and pip audit catch known CVEs in dependencies that no amount of code review will find.
• Echoing the secret you found: Even in the report, truncate to the first 4-8 characters. A report that reproduces full keys becomes a second copy of the leak.