PubChem MCP — NIH chemistry compound database (no auth)
SaferSkills independently audited Mcp Pubchem (Agent Skill) and scored it 100/100 (green). The audit ran 55 deterministic rules across Security, Supply Chain, Maintenance, Transparency, and Community; it found 0 high-severity and 0 lower-severity findings. The full rule-by-rule trace and per-finding evidence are below. Free, methodology-open.
Findings & checks · 0 flagged
Every scanned point with the score it earned and what moved between them.
First recorded scan — no prior version to compare against.
The primary manifest — the file an agent reads to learn what this artifact does.
PubChem MCP — NIH chemistry compound database (no auth)
Part of Pipeworx — an MCP gateway connecting AI agents to 673+ live data sources.
| Tool | Description |
|---|---|
get_synonyms | List all names (synonyms) for a CID — common names, IUPAC, trade names, CAS numbers, etc. |
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"pubchem": {
"url": "https://gateway.pipeworx.io/pubchem/mcp"
}
}
}Or connect to the full Pipeworx gateway for access to all 673+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Pubchem data" })The gateway picks the right tool and fills the arguments automatically.
MIT
~30 seconds. Free. No account. Every finding cites a rule and a line of evidence.