rcsb-pdb-entry-summary 100/100

Is rcsb-pdb-entry-summary safe to install?

SaferSkills independently audited rcsb-pdb-entry-summary (Agent Skill) and scored it 100/100 (green). The audit ran 55 deterministic rules across Security, Supply Chain, Maintenance, Transparency, and Community; it found 0 high-severity and 0 lower-severity findings. The full rule-by-rule trace and per-finding evidence are below. Free, methodology-open.

CategoryWeightCategory scoreContribution

Securityprompt, exec, net, exfil, eval

35%

100

35.0 pts

Supply chainhash, typosquat, maintainer, lockfile

20%

100

20.0 pts

Maintenancestaleness, pinning, CI

15%

100

15.0 pts

TransparencySKILL.md, perms, README

15%

100

15.0 pts

Communityinstalls, verify, response

15%

100

15.0 pts

Findings & checks · 0 flagged

Securityscore 100 · 0 findings

✓—All security checks passedNo findings in this category for the latest scan.pass

Supply chainscore 100 · 0 findings

✓—All supply chain checks passedNo findings in this category for the latest scan.pass

Maintenancescore 100 · 0 findings

✓—All maintenance checks passedNo findings in this category for the latest scan.pass

Transparencyscore 100 · 0 findings

✓—All transparency checks passedNo findings in this category for the latest scan.pass

Communityscore 100 · 0 findings

✓—All community checks passedNo findings in this category for the latest scan.pass

The primary manifest — the file an agent reads to learn what this artifact does.

skills/structural-biology/rcsb-pdb-entry-summary/SKILL.md · 1 file

skills/structural-biology/rcsb-pdb-entry-summary/SKILL.md1.6 KB · Markdown

name: rcsb-pdb-entry-summary

description: Use this skill to fetch a canonical RCSB PDB entry record by accession when you need quick structural metadata. Do not use it for search ranking or full structure parsing pipelines.

Purpose

Fetch a structure entry summary from the official RCSB data API using a PDB ID.

When to use

You already know the PDB accession.
You want a small, official structural metadata payload.

When not to use

You need text search across the whole archive.
You need atom-level coordinate processing.

Inputs

PDB entry ID
Optional output path

Outputs

JSON payload from data.rcsb.org/rest/v1/core/entry/<id>

Requirements

Python 3.13+
Network access to data.rcsb.org

Procedure

Run python3 skills/structural-biology/rcsb-pdb-entry-summary/scripts/fetch_pdb_entry.py --entry-id 4HHB --out skills/structural-biology/rcsb-pdb-entry-summary/assets/4hhb_entry.json.
Review the returned title, resolution, and audit fields.
Use related RCSB endpoints later for deeper polymer or assembly inspection.

Validation

Command exits successfully.
Output includes top-level entry metadata for the requested PDB ID.

Failure modes and fixes

404 or empty data: confirm the accession exists and is current.
Need archive search: use the RCSB search API in a later, separate skill.

Safety and limits

Metadata lookup only.
This skill does not download coordinate files or run structural analysis.

Examples

python3 .../fetch_pdb_entry.py --entry-id 1STP

Provenance

RCSB data API docs: https://data.rcsb.org/redoc/index.html

ensembl-gene-lookup

rcsb-pdb-entry-summary— agent skill

Is rcsb-pdb-entry-summary safe to install?

Purpose

When to use

When not to use

Inputs

Outputs

Requirements

Procedure

Validation

Failure modes and fixes

Safety and limits

Examples

Provenance

Audit the pieces. Scan the whole. Decide.

Is rcsb-pdb-entry-summary safe to install?

Purpose

When to use

When not to use

Inputs

Outputs

Requirements

Procedure

Validation

Failure modes and fixes

Safety and limits

Examples

Provenance

Related skills

Audit the pieces. Scan the whole. Decide.