pysam-sam-bam-summary-starter — independently scanned and version-tracked by SaferSkills.
SaferSkills independently audited pysam-sam-bam-summary-starter (Agent Skill) and scored it 100/100 (green). The audit ran 55 deterministic rules across Security, Supply Chain, Maintenance, Transparency, and Community; it found 0 high-severity and 0 lower-severity findings. The full rule-by-rule trace and per-finding evidence are below. Free, methodology-open.
Findings & checks · 0 flagged
Every scanned point with the score it earned and what moved between them.
First recorded scan — no prior version to compare against.
The primary manifest — the file an agent reads to learn what this artifact does.
Use this skill to read a small SAM, BAM, or CRAM file with pysam, summarize core alignment statistics, and optionally emit an indexed BAM artifact for downstream debugging or demos.
pysam.AlignmentFile..bai index.SAM/BAM/CRAM handling in Python.slurm/envs/genomics/bin/python skills/genomics/pysam-sam-bam-summary-starter/scripts/run_pysam_sam_bam_summary.py \
--input skills/genomics/pysam-sam-bam-summary-starter/examples/toy_reads.sam \
--out scratch/genomics/pysam_summary.json \
--bam-out scratch/genomics/toy_reads.bampython3 -m unittest discover -s skills/genomics/pysam-sam-bam-summary-starter/tests -p 'test_*.py'record_count == 4, mapped_count == 3, and reference_mapped_counts.chr1 == 2~30 seconds. Free. No account. Every finding cites a rule and a line of evidence.