pydeseq2-differential-expression-starter — independently scanned and version-tracked by SaferSkills.
SaferSkills independently audited pydeseq2-differential-expression-starter (Agent Skill) and scored it 100/100 (green). The audit ran 55 deterministic rules across Security, Supply Chain, Maintenance, Transparency, and Community; it found 0 high-severity and 0 lower-severity findings. The full rule-by-rule trace and per-finding evidence are below. Free, methodology-open.
Findings & checks · 0 flagged
Every scanned point with the score it earned and what moved between them.
First recorded scan — no prior version to compare against.
The primary manifest — the file an agent reads to learn what this artifact does.
Use this skill to run a deterministic toy bulk RNA-seq differential-expression pass with PyDESeq2 and summarize the ranked genes.
slurm/envs/transcriptomics/bin/python skills/transcriptomics/pydeseq2-differential-expression-starter/scripts/run_pydeseq2_differential_expression.py \
--counts skills/transcriptomics/pydeseq2-differential-expression-starter/examples/toy_counts.tsv \
--metadata skills/transcriptomics/pydeseq2-differential-expression-starter/examples/toy_metadata.tsv \
--out scratch/pydeseq2/differential_expression_summary.jsonpython3 -m unittest discover -s skills/transcriptomics/pydeseq2-differential-expression-starter/tests -p 'test_*.py'python3 -m unittest tests.smoke.test_phase24_frontier_closure_skills -v~30 seconds. Free. No account. Every finding cites a rule and a line of evidence.