minimap2-read-mapping-starter — independently scanned and version-tracked by SaferSkills.
SaferSkills independently audited minimap2-read-mapping-starter (Agent Skill) and scored it 100/100 (green). The audit ran 55 deterministic rules across Security, Supply Chain, Maintenance, Transparency, and Community; it found 0 high-severity and 0 lower-severity findings. The full rule-by-rule trace and per-finding evidence are below. Free, methodology-open.
Findings & checks · 0 flagged
Every scanned point with the score it earned and what moved between them.
First recorded scan — no prior version to compare against.
The primary manifest — the file an agent reads to learn what this artifact does.
Use this skill to align a tiny FASTQ file against a small reference with minimap2, sort and index the resulting BAM, and summarize the alignments.
minimap2 -a -x sr from the repo-managed genomics prefixsamtoolsalignment-and-mapping./slurm/envs/genomics/bin/python skills/genomics/minimap2-read-mapping-starter/scripts/run_minimap2_read_mapping.py \
--reference skills/genomics/minimap2-read-mapping-starter/examples/toy_reference.fa \
--reads skills/genomics/minimap2-read-mapping-starter/examples/toy_reads.fastq \
--bam-out scratch/genomics/minimap2/toy_reads.bam \
--summary-out scratch/genomics/minimap2/toy_reads_summary.jsonpython3 -m unittest discover -s skills/genomics/minimap2-read-mapping-starter/tests -p 'test_*.py'read_count == 3, mapped_count == 2, reference_names == ["chrToy"]~30 seconds. Free. No account. Every finding cites a rule and a line of evidence.