bio-instrument-data — independently scanned and version-tracked by SaferSkills.
SaferSkills independently audited bio-instrument-data (Agent Skill) and scored it 100/100 (green). The audit ran 55 deterministic rules across Security, Supply Chain, Maintenance, Transparency, and Community; it found 0 high-severity and 0 lower-severity findings. The full rule-by-rule trace and per-finding evidence are below. Free, methodology-open.
Findings & checks · 0 flagged
Every scanned point with the score it earned and what moved between them.
First recorded scan — no prior version to compare against.
The primary manifest — the file an agent reads to learn what this artifact does.
Convert instrument files into standardized Allotrope Simple Model (ASM) format for LIMS upload, data lakes, or handoff to data engineering teams.
Note: This skill utilizes the Bio-Informatics Pack. Scripts and references are located in: src-tauri/resources/packs/bio-informatics-pack/allotrope-conversion/When Uncertain: If you're unsure how to map a field to ASM (e.g., is this raw data or calculated?), ask the user for clarification. Refer to the pack's references/field_classification_guide.md for guidance.# Install requirements first
pip install allotropy pandas openpyxl pdfplumber --break-system-packages
# Core conversion
from allotropy.parser_factory import Vendor
from allotropy.to_allotrope import allotrope_from_file
# Convert with allotropy
asm = allotrope_from_file("instrument_data.csv", Vendor.BECKMAN_VI_CELL_BLU)ASM JSON (default) - Full semantic structure with ontology URIs
Flattened CSV - 2D tabular representation
Both - Generate both formats for maximum flexibility
IMPORTANT: Separate raw measurements from calculated/derived values.
measurement-document (direct instrument readings)calculated-data-aggregate-document (derived values)Calculated values MUST include traceability via data-source-aggregate-document.
Always validate ASM output before delivering to the user:
# Run validation script from the pack
python src-tauri/resources/packs/bio-informatics-pack/allotrope-conversion/scripts/validate_asm.py output.json~30 seconds. Free. No account. Every finding cites a rule and a line of evidence.