bio-prefect-dask-nextflow — independently scanned and version-tracked by SaferSkills.
SaferSkills independently audited bio-prefect-dask-nextflow (Agent Skill) and scored it 100/100 (green). The audit ran 55 deterministic rules across Security, Supply Chain, Maintenance, Transparency, and Community; it found 0 high-severity and 0 lower-severity findings. The full rule-by-rule trace and per-finding evidence are below. Free, methodology-open.
Findings & checks · 0 flagged
Every scanned point with the score it earned and what moved between them.
First recorded scan — no prior version to compare against.
The primary manifest — the file an agent reads to learn what this artifact does.
Choose and scaffold the right workflow engine for local, distributed, or HPC bioinformatics pipelines.
Supplementary docs last verified: 2026-05-30. Current source checks cover Prefect 3.7.2, Dask/distributed 2026.3.0, prefect-dask v0.2.6 (archived repository; install through prefect[dask]), and Nextflow v26.04.3.
| Task | Action |
|---|---|
| Engine choice | See decision-matrix.md |
| Prefect+Dask scaffold | See prefect-dask.md |
| Prefect on Slurm | See prefect-hpc-slurm.md |
| Nextflow on HPC | See nextflow-hpc.md |
| Examples | See examples.md |
Choice: Nextflow
Why: CLI-heavy pipeline, HPC scheduler required, reproducible cache/resume needed.Issue: Workflow fails on HPC due to environment mismatch Solution: Pin container/conda versions and validate with a minimal test dataset.
~30 seconds. Free. No account. Every finding cites a rule and a line of evidence.